PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541468.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 422aa    MW: 48474.4 Da    PI: 5.201
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541468.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-12372420147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r+ WT eE + l ++vk++G+  Wk+I +  +    +Rt+ ++k++w+++
   XP_010541468.1 372 RKGWTREEVQTLREGVKEYGKS-WKAIKEAYPelfANRTPVDLKDKWRNL 420
                      667*****************88.*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.052368422IPR017930Myb domain
SuperFamilySSF466894.74E-13369421IPR009057Homeodomain-like
SMARTSM007172.0E-7371422IPR001005SANT/Myb domain
PfamPF002494.0E-11372420IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-13372420IPR009057Homeodomain-like
CDDcd116607.76E-17375421No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDADGDKVID KWVCEFVLRR QQNPRVCGKR LLSTLRLEED DGCTTLKKSA VLRDIWNRLI  60
QGIVDERILD LLELFEKLQL HEGSAILESL KSAYCWAAAE CTVRYMLAVD AVEAFLYWEA  120
LQRIWDLRIG LLNERDSVLV TQELIDWGYN LKNAIDDSEL YQRLRQINTR YFAISYLCEF  180
VKEHWVLVGS PYLELEASRR FRHKGNDTNV ERNPDDVRNG ETSPRPNDAH QCPGHLEDDP  240
IDNTNGQSVF NVGQQEHEQS DNKGKPSVAQ ELKEDLLEVE ALINGLTRDG IDDDQTSEQH  300
STSVTPQRLQ AGVRGQDYNK EPENVNERAS DSEGTLSGTV RPHLPNIKSF SVSPLRKGRM  360
PKPQSSADRR LRKGWTREEV QTLREGVKEY GKSWKAIKEA YPELFANRTP VDLKDKWRNL  420
VA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541468.10.0PREDICTED: uncharacterized protein LOC104814922
STRINGAl_scaffold_0008_23021e-111(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-109TRF-like 5